Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009588.1_1342_1418_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1342 - 1418

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCCCC

5'SS Class:

strong_major

3'SS Sequence:

TCCCCGCTCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGCTGAC

U12 Branch Point Sequence:

TGGGCGCTGACT

Flanking Amino Acid:

LYDLAKQVQSRTDLSDTFSP

Intron Amino Acid Position:

113

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.8

0.77

0.9

65.8

40.2

Major BPS

53.9

0.1

1.2

46.4

38.9

Major PPT

71.8

0.49

0.8

68.3

31.9

Minor 5ss

33.7

-1.9

42.6

44.4

Minor BPS

-0.3

2.4

64.44

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017086

Chromosome:

PEDO01009588.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041566

802 - 2142

1341