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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009599.1_1330_1455_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1330 - 1455
Intron Length:
126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTCC
5'SS Class:
strong_major
3'SS Sequence:
TCGCTCCGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTAATTTAATT
Flanking Amino Acid:
VAYYGSTSNKRNTWTRAKVL
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.6
33.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
71
0.47
1
65.3
36.2
Minor 5ss
38
-1.4
3.2
50.9
45.8
Minor BPS
65.5
0.57
1.5
80.14
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020884
Chromosome:
PEDO01009599.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040182
278 - 2327
2050