Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009599.1_587_1047_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

587 - 1047

Intron Length:

461

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAT|GTACGTGAG

5'SS Class:

major

3'SS Sequence:

TTTAATTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

CCAGTTTTAATT

Flanking Amino Acid:

FYSKQYQTLYVNNNGVISFG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.2

0.55

1.1

65.5

40.5

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

86.4

0.82

0.8

36.2

Minor 5ss

33.4

-1.9

3.4

43.9

44.2

Minor BPS

55.2

0.24

1.4

62.98

42.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020884

Chromosome:

PEDO01009599.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040182

278 - 2327

2050