Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009619.1_7729_9929_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7729 - 9929

Intron Length:

2201

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTACGAGCC

5'SS Class:

major

3'SS Sequence:

TCCTTCCCCCTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTATTCTTATTT

Flanking Amino Acid:

TDSEGDDTENASGDGCEDDD

Intron Amino Acid Position:

377

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.2

0.5

1.1

58.4

39.5

Major BPS

96.5

1.15

0.6

34.2

Major PPT

73.2

0.52

0.7

30.2

Minor 5ss

31.1

-2.2

3.5

43.2

Minor BPS

0.7

1.5

84.24

36.8

Associated Gene:

Gene:

AKAP8

Ensembl Gene ID:

ENSAPLG00000007188

Chromosome:

PEDO01009619.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040928

2965 - 18142

15178