Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009624.1_100501_100589_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

100501 - 100589

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGAGGA

5'SS Class:

major

3'SS Sequence:

CCCTTCCCTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCTGAG

U12 Branch Point Sequence:

CGGGGCTGAGCC

Flanking Amino Acid:

QKDNSDRRKELRTEGGRVLR

Intron Amino Acid Position:

551

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.9

0.71

66.1

40.1

Major BPS

43.9

-0.3

1.6

36.8

44.4

Major PPT

0.65

0.7

72.8

25.4

Minor 5ss

28.4

-2.5

3.5

38.3

46.7

Minor BPS

39.7

-0.8

43.46

Associated Gene:

Gene:

SEMA3F

Ensembl Gene ID:

ENSAPLG00000008161

Chromosome:

PEDO01009624.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023587

90970 - 101107

10138

ENSAPLT00000008575

90970 - 101006

10037