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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009624.1_103921_104015_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
103921 - 104015
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CCGTCCCGGCCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AGCTCAG
U12 Branch Point Sequence:
CCCAGCTCAGCC
Flanking Amino Acid:
SGKSTIVKQMKIIHQDGYSL
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
48.8
-0
1.5
57.1
41.8
Major PPT
57.1
0.16
1.1
49.9
39.3
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
39.5
-0.8
2
42.67
44.5

Associated Gene:

Gene:
GNAT1
Ensembl Gene ID:
ENSAPLG00000004306
Chromosome:
PEDO01009624.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010215
103151 - 105452
2302