Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009624.1_105099_105261_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

105099 - 105261

Intron Length:

163

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGGCGG

5'SS Class:

major

3'SS Sequence:

TGCCTGCCACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GACACAC

U12 Branch Point Sequence:

CTGCCTGCCACC

Flanking Amino Acid:

HLSICFPDYDGPNTYEDAGN

Intron Amino Acid Position:

288

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.2

0.52

1.1

51.7

46.6

Major BPS

46.9

-0.1

1.1

52.6

34.2

Major PPT

63.8

0.31

55.2

40.2

Minor 5ss

25.2

-2.9

3.1

30.3

42.8

Minor BPS

37.8

-0.9

2.3

47.12

42.7

Associated Gene:

Gene:

GNAT1

Ensembl Gene ID:

ENSAPLG00000004306

Chromosome:

PEDO01009624.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010215

103151 - 105452

2302