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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009624.1_119738_119863_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
119738 - 119863
Intron Length:
126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
CCTGTCCCAGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTACCAG
U12 Branch Point Sequence:
CCCCCCGTACCA
Flanking Amino Acid:
VQPAKPVTLEPAGTPLILHN
Intron Amino Acid Position:
341

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
39.7
-0.6
1.7
46.5
46.6
Major PPT
68.4
0.41
0.9
63
33
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
43.8
-0.4
2.2
51.69
46.3

Associated Gene:

Gene:
OASL
Ensembl Gene ID:
ENSAPLG00000022262
Chromosome:
PEDO01009624.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038599
119266 - 121939
2674