Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009624.1_13309_13648_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13309 - 13648

Intron Length:

340

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGCTGG

5'SS Class:

major

3'SS Sequence:

TGTCGCCCCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTAAC

U12 Branch Point Sequence:

CTGCTGCTAACT

Flanking Amino Acid:

IVNNMFFAHQLIPNSCATHA

Intron Amino Acid Position:

333

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.1

0.54

1.1

56.7

Major BPS

69.4

0.48

1.1

69.6

35.5

Major PPT

68.8

0.42

0.9

58.6

38.4

Minor 5ss

36.4

-1.5

3.2

46.4

Minor BPS

-0.3

2.3

65.29

45.2

Associated Gene:

Gene:

SEMA3G

Ensembl Gene ID:

ENSAPLG00000012760

Chromosome:

PEDO01009624.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022242

5871 - 29342

23472

ENSAPLT00000021381

5871 - 30507

24637