Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009624.1_14250_24549_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

14250 - 24549

Intron Length:

10300

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CCG|GCATCTTCC

5'SS Class:

weak_major

3'SS Sequence:

TGTCCCTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAGTAAC

U12 Branch Point Sequence:

CTGGCCAGAAGT

Flanking Amino Acid:

LTADFLGRDPGLFTLLVEDF

Intron Amino Acid Position:

260

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

60.2

0.24

1.4

57.9

45.5

Major BPS

57.9

0.2

1.1

59.4

34.8

Major PPT

82.1

0.72

0.8

73.1

37.2

Minor 5ss

43.3

-0.7

3.7

62.3

42.5

Minor BPS

44.1

-0.3

2.1

61.3

Associated Gene:

Gene:

SEMA3G

Ensembl Gene ID:

ENSAPLG00000012760

Chromosome:

PEDO01009624.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021381

5871 - 30507

24637