Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009624.1_24817_25091_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24817 - 25091

Intron Length:

275

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGCGCC

5'SS Class:

major

3'SS Sequence:

TCCCCAACCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCCCAA

U12 Branch Point Sequence:

CTGTCCCCAACC

Flanking Amino Acid:

AFVYVGHRGEHAFSLDPTSV

Intron Amino Acid Position:

146

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.4

0.67

1.1

68.2

38.6

Major BPS

50.5

0.01

1.3

60.6

37.4

Major PPT

64.8

0.33

0.9

54.9

Minor 5ss

36.2

-1.6

3.5

50.4

46.4

Minor BPS

0.1

67.41

43.9

Associated Gene:

Gene:

SEMA3G

Ensembl Gene ID:

ENSAPLG00000012760

Chromosome:

PEDO01009624.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013300

19636 - 29342

9707

ENSAPLT00000022242

5871 - 29342

23472