Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009624.1_26886_29251_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

26886 - 29251

Intron Length:

2366

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTGAGCCGG

5'SS Class:

major

3'SS Sequence:

CCCTGCCCGACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAC

U12 Branch Point Sequence:

TCCTGCTGACGC

Flanking Amino Acid:

SLPRLRLPHRELLSTNRSVL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.8

0.51

1.1

50.9

47.3

Major BPS

66.3

0.4

1.1

41.8

Major PPT

62.7

0.29

56.7

33.7

Minor 5ss

32.3

-2

39.4

45.9

Minor BPS

40.9

-0.7

2.2

50.11

46.6

Associated Gene:

Gene:

SEMA3G

Ensembl Gene ID:

ENSAPLG00000012760

Chromosome:

PEDO01009624.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022242

5871 - 29342

23472

ENSAPLT00000021381

5871 - 30507

24637

ENSAPLT00000013300

19636 - 29342

9707