Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009624.1_59414_60444_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

59414 - 60444

Intron Length:

1031

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATAGTGC

5'SS Class:

major

3'SS Sequence:

TTGTTTCTCCTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAC

U12 Branch Point Sequence:

TCTTACTAGACC

Flanking Amino Acid:

PKFEDWLCNKCCLYNFRRRL

Intron Amino Acid Position:

289

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.2

0.5

1.1

59.8

Major BPS

81.5

0.78

0.9

71.6

36.1

Major PPT

79.9

0.67

0.8

73.8

36.9

Minor 5ss

42.5

-0.8

3.2

58.8

46.1

Minor BPS

56.6

0.19

1.9

70.6

41.2

Associated Gene:

Gene:

RBM5

Ensembl Gene ID:

ENSAPLG00000011176

Chromosome:

PEDO01009624.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025980

53286 - 67945

14660

ENSAPLT00000011724

53286 - 68197

14912