Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009624.1_60506_60637_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

60506 - 60637

Intron Length:

132

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAAGTTGC

5'SS Class:

strong_major

3'SS Sequence:

TCTTCCTGTGAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATGTCAT

U12 Branch Point Sequence:

AATGTCATGACT

Flanking Amino Acid:

KCFRCGADKFDSEQEVPPGA

Intron Amino Acid Position:

309

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.8

0.84

0.9

73.5

38.6

Major BPS

0.65

1.1

77.4

37.3

Major PPT

69.6

0.44

1.1

71.3

33.4

Minor 5ss

-1

2.8

53.5

43.7

Minor BPS

0.14

1.7

70.79

Associated Gene:

Gene:

RBM5

Ensembl Gene ID:

ENSAPLG00000011176

Chromosome:

PEDO01009624.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025980

53286 - 67945

14660

ENSAPLT00000011724

53286 - 68197

14912