Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009624.1_62786_62948_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

62786 - 62948

Intron Length:

163

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGTTT

5'SS Class:

strong_major

3'SS Sequence:

GTTTGAATTTTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTAAA

U12 Branch Point Sequence:

ATTACAATAACC

Flanking Amino Acid:

IAAAQWSSTQPQTGEGSTVD

Intron Amino Acid Position:

447

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.9

1.01

0.8

88.6

27.1

Major BPS

81.6

0.78

0.8

24.9

Major PPT

71.7

0.49

67.8

42.5

Minor 5ss

42.7

-0.8

3.4

64.1

47.4

Minor BPS

55.6

0.15

1.9

72.52

37.4

Associated Gene:

Gene:

RBM5

Ensembl Gene ID:

ENSAPLG00000011176

Chromosome:

PEDO01009624.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025980

53286 - 67945

14660

ENSAPLT00000011724

53286 - 68197

14912