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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009624.1_92476_93361_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
92476 - 93361
Intron Length:
886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGCTAAC
U12 Branch Point Sequence:
CCGGCGCTAACT
Flanking Amino Acid:
AFINRGRKAQGFPPSQPVPP
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
57.1
0.18
1.1
59
36
Major PPT
82.8
0.74
0.7
76.2
32.4
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
43.6
-0.4
2.4
59.63
49.5

Associated Gene:

Gene:
SEMA3F
Ensembl Gene ID:
ENSAPLG00000008161
Chromosome:
PEDO01009624.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023587
90970 - 101107
10138