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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009624.1_92476_95349_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
92476 - 95349
Intron Length:
2874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAC
U12 Branch Point Sequence:
AATGTCACAAGC
Flanking Amino Acid:
AFINRGRKAQDYIFYLEPDK
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
66.1
0.4
1.2
69.1
37.9
Major PPT
80.3
0.68
0.7
72.7
32
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
41.5
-0.6
2
50.73
39.8

Associated Gene:

Gene:
SEMA3F
Ensembl Gene ID:
ENSAPLG00000008161
Chromosome:
PEDO01009624.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008575
90970 - 101006
10037