About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009624.1_93452_95349_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
93452 - 95349
Intron Length:
1898

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGAACG
5'SS Class:
major
3'SS Sequence:
CTTCCTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAC
U12 Branch Point Sequence:
AATGTCACAAGC
Flanking Amino Acid:
PRSPRPAESKDYIFYLEPDK
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
65.1
40.8
Major BPS
66.1
0.4
1.2
69.1
37.9
Major PPT
80.3
0.68
0.7
72.7
32
Minor 5ss
27
-2.6
2.9
31.5
42.5
Minor BPS
41.5
-0.6
2
50.73
39.8

Associated Gene:

Gene:
SEMA3F
Ensembl Gene ID:
ENSAPLG00000008161
Chromosome:
PEDO01009624.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023587
90970 - 101107
10138