Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009624.1_97526_97693_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

97526 - 97693

Intron Length:

168

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTGAGCACA

5'SS Class:

major

3'SS Sequence:

CTCCTCCTGCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGTCCAT

U12 Branch Point Sequence:

AGGTCCATGAGG

Flanking Amino Acid:

PVIYAVFSASGSVFKGSAVC

Intron Amino Acid Position:

264

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.4

0.62

67.6

39.4

Major BPS

47.8

-0.1

1.5

58.2

48.3

Major PPT

71.6

0.49

0.9

36.4

Minor 5ss

33.8

-1.8

2.8

32.8

41.8

Minor BPS

46.3

-0.4

50.54

43.5

Associated Gene:

Gene:

SEMA3F

Ensembl Gene ID:

ENSAPLG00000008161

Chromosome:

PEDO01009624.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023587

90970 - 101107

10138

ENSAPLT00000008575

90970 - 101006

10037