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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009646.1_300_597_F

Intron Information:

Intron Rank:
146579
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
300 - 597
Intron Length:
298

Sequence Information:

Terminal Dinucleotides:
GT-CT
5'SS Sequence:
TTT|GTGTTTTTT
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTTTCTCCT|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTTTTCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.7
0.16
1.1
64.1
35.7
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
32.4
-1
4.3
80.5
37
Minor 5ss
49.4
-0
2.7
72.2
39
Minor BPS
45.5
-0.2
3.6
82.93
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028975
Chromosome:
PEDO01009646.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021499
21 - 1973
1953