Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009674.1_513_1180_R

Intron Information:

Intron Rank:

132492

Intron Class:

major

Intron Phase:

Intron Coordinates:

513 - 1180

Intron Length:

668

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACTGGCG

5'SS Class:

major

3'SS Sequence:

CATTGCATAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTGCAT

U12 Branch Point Sequence:

CATTGCATAACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.8

0.42

1.1

54.4

42.9

Major BPS

66.2

0.4

1.4

77.4

37.3

Major PPT

65.8

0.36

59.2

40.3

Minor 5ss

28.5

-2.5

3.6

39.1

46.2

Minor BPS

54.7

0.14

2.1

69.49

42.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018554

Chromosome:

PEDO01009674.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020333

342 - 2641

2300