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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009695.1_3532_3805_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3532 - 3805
Intron Length:
274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTAAAATAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTTTTTAAAAT
Flanking Amino Acid:
NHLPSHIRILGLKRVTGGFN
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1
73.4
43.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
61.8
0.27
1.2
67.8
40.9
Minor 5ss
35.4
-1.7
3.2
40.5
45.5
Minor BPS
58
0.33
1.8
75.95
41.3

Associated Gene:

Gene:
PUS1
Ensembl Gene ID:
ENSAPLG00000015695
Chromosome:
PEDO01009695.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016354
2374 - 4272
1899