Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009705.1_1165_1753_R

Intron Information:

Intron Rank:

144144

Intron Class:

major

Intron Phase:

Intron Coordinates:

1165 - 1753

Intron Length:

589

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTGAT

5'SS Class:

strong_major

3'SS Sequence:

CCATTTTCTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTACAC

U12 Branch Point Sequence:

GGTTGTTCACTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.01

0.7

86.6

22.3

Major BPS

72.8

0.57

30.3

Major PPT

80.8

0.69

0.8

72.8

37.3

Minor 5ss

28.9

-2.4

3.2

39.6

46.4

Minor BPS

43.7

-0.4

2.1

61.2

43.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024812

Chromosome:

PEDO01009705.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037533

109 - 3875

3767