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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009727.1_21137_23196_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21137 - 23196
Intron Length:
2060

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGGCG
5'SS Class:
major
3'SS Sequence:
TTTCTCTGCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTCAC
U12 Branch Point Sequence:
CCACCAGTCACG
Flanking Amino Acid:
GRGRGAAAWARSLCPWIEAC
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
61.7
43
Major BPS
54.8
0.12
1.2
58.7
38.1
Major PPT
79.2
0.66
0.9
72.9
37.4
Minor 5ss
30
-2.3
3.5
39.7
45.8
Minor BPS
36.5
-1.2
2.4
38.33
44.3

Associated Gene:

Gene:
SLC6A9
Ensembl Gene ID:
ENSAPLG00000030350
Chromosome:
PEDO01009727.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032617
20517 - 34814
14298