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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009727.1_56892_56979_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56892 - 56979
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTGTG
5'SS Class:
major
3'SS Sequence:
TCTGTGTTAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTCAC
U12 Branch Point Sequence:
CCCGCCTCACCT
Flanking Amino Acid:
QKETFSQQILRERVNKRRVK
Intron Amino Acid Position:
283

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
70
40.5
Major BPS
54.7
0.12
1.2
59.2
39.1
Major PPT
74.1
0.54
1
69.7
40.3
Minor 5ss
38.7
-1.3
3
49.5
46.8
Minor BPS
46.3
-0.2
2
59.08
50

Associated Gene:

Gene:
IPO13
Ensembl Gene ID:
ENSAPLG00000001349
Chromosome:
PEDO01009727.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002065
56795 - 67528
10734