Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009727.1_57552_57723_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

57552 - 57723

Intron Length:

172

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGTACC

5'SS Class:

strong_major

3'SS Sequence:

TTTCCACCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTCCAC

U12 Branch Point Sequence:

CTCACCTCAGCG

Flanking Amino Acid:

NLDVKAVFQCGVLSLKFPEA

Intron Amino Acid Position:

173

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.9

76.7

31.8

Major BPS

67.4

0.43

1.3

78.4

35.2

Major PPT

0.7

0.8

74.6

29.3

Minor 5ss

31.7

-2.1

2.6

35.1

34.5

Minor BPS

47.1

-0.3

1.9

52.31

47.8

Associated Gene:

Gene:

IPO13

Ensembl Gene ID:

ENSAPLG00000001349

Chromosome:

PEDO01009727.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002065

56795 - 67528

10734