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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009727.1_62662_64342_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62662 - 64342
Intron Length:
1681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TATTATATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTCTCTTAAGT
Flanking Amino Acid:
TSVTLTLFQQGPRDHPDIVD
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
71.5
38.6
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
77.6
0.62
0.9
75.2
39
Minor 5ss
39.1
-1.2
3
49.9
46.5
Minor BPS
73.3
0.81
1.6
88.99
35.6

Associated Gene:

Gene:
IPO13
Ensembl Gene ID:
ENSAPLG00000001349
Chromosome:
PEDO01009727.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002065
56795 - 67528
10734