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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009728.1_100316_100555_F

Intron Information:

Intron Rank:
125473
Intron Class:
major
Intron Phase:
Intron Coordinates:
100316 - 100555
Intron Length:
240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGCTT
5'SS Class:
strong_major
3'SS Sequence:
ATCTCTTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTTTCTTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
75.1
40.7
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
75.1
0.57
1
79.2
32.4
Minor 5ss
42.8
-0.8
3.4
64.4
47
Minor BPS
80.3
1.03
1.4
95.73
30.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017621
Chromosome:
PEDO01009728.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048407
98471 - 109238
10768
ENSAPLT00000035630
98471 - 109238
10768
ENSAPLT00000025962
98471 - 109238
10768