About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009728.1_100577_100884_F

Intron Information:

Intron Rank:
125474
Intron Class:
major
Intron Phase:
Intron Coordinates:
100577 - 100884
Intron Length:
308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
GTCTCTCTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTTAG
U12 Branch Point Sequence:
TAGGGCTGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.9
38.6
Major BPS
50.9
0.02
1.4
49.4
37.6
Major PPT
79.4
0.66
0.8
77.3
31.4
Minor 5ss
35.4
-1.7
3
42
44.5
Minor BPS
48.3
-0
2
65.64
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017621
Chromosome:
PEDO01009728.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035630
98471 - 109238
10768
ENSAPLT00000025962
98471 - 109238
10768
ENSAPLT00000048407
98471 - 109238
10768