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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009728.1_101151_101466_F

Intron Information:

Intron Rank:
125477
Intron Class:
major
Intron Phase:
Intron Coordinates:
101151 - 101466
Intron Length:
316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
CTATTATTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TATTTCTCTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
76.5
39.2
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
75.2
0.57
0.8
73.9
35.5
Minor 5ss
34.9
-1.7
3.3
50
46.3
Minor BPS
55.7
0.26
1.8
76.85
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017621
Chromosome:
PEDO01009728.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048407
98471 - 109238
10768
ENSAPLT00000035630
98471 - 109238
10768
ENSAPLT00000025962
98471 - 109238
10768