Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009728.1_101492_102192_F

Intron Information:

Intron Rank:

125478

Intron Class:

minor-like

Intron Phase:

Intron Coordinates:

101492 - 102192

Intron Length:

701

Sequence Information:

Terminal Dinucleotides:

GT-TA

5'SS Sequence:

TAA|GTGTCCTCC

5'SS Class:

weak_minor

3'SS Sequence:

TTTGTCTGTTTTA|A

3'SS Class:

minor_BPS

U2 Branch Point Sequence:

TTTTAAC

U12 Branch Point Sequence:

AGTCTTTTAACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

52.9

0.07

1.2

49.2

36.5

Major BPS

89.7

0.98

0.7

89.9

Major PPT

25.9

-1.3

4.2

62.3

44.2

Minor 5ss

60.6

0.36

2.2

68.1

37.1

Minor BPS

68.4

0.57

1.2

71.66

33.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017621

Chromosome:

PEDO01009728.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025962

98471 - 109238

10768

ENSAPLT00000048407

98471 - 109238

10768

ENSAPLT00000035630

98471 - 109238

10768