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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009728.1_103820_104193_F

Intron Information:

Intron Rank:
125483
Intron Class:
major
Intron Phase:
Intron Coordinates:
103820 - 104193
Intron Length:
374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTGCA
5'SS Class:
major
3'SS Sequence:
TCTTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TCCTGTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
69.1
35.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
93.5
0.98
0.6
92.3
18.1
Minor 5ss
35.2
-1.7
3.2
47.2
42.3
Minor BPS
48.9
-0
2
66.47
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017621
Chromosome:
PEDO01009728.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048407
98471 - 109238
10768
ENSAPLT00000035630
98471 - 109238
10768
ENSAPLT00000025962
98471 - 109238
10768