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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009728.1_104423_104541_F

Intron Information:

Intron Rank:
125485
Intron Class:
major
Intron Phase:
Intron Coordinates:
104423 - 104541
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTAAGTCCT
5'SS Class:
major
3'SS Sequence:
TTCTACTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTTAACTGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1.3
75.3
40.8
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
81
0.7
0.8
73.5
36.7
Minor 5ss
38.2
-1.3
3
51.1
38.4
Minor BPS
58.2
0.34
1.8
80.8
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017621
Chromosome:
PEDO01009728.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048407
98471 - 109238
10768
ENSAPLT00000035630
98471 - 109238
10768
ENSAPLT00000025962
98471 - 109238
10768