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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009728.1_104563_104918_F

Intron Information:

Intron Rank:
125486
Intron Class:
major
Intron Phase:
Intron Coordinates:
104563 - 104918
Intron Length:
356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GCTTTTCTATGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
74.5
41.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
85.3
0.79
0.8
81.2
29.6
Minor 5ss
38
-1.4
3
47.2
42.5
Minor BPS
41.8
-0.6
2
50.5
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017621
Chromosome:
PEDO01009728.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048407
98471 - 109238
10768
ENSAPLT00000035630
98471 - 109238
10768
ENSAPLT00000025962
98471 - 109238
10768