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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009728.1_105320_105557_F

Intron Information:

Intron Rank:
125488
Intron Class:
major
Intron Phase:
Intron Coordinates:
105320 - 105557
Intron Length:
238

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTTTCTTTTTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
88.8
25
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
92.6
0.96
0.5
92.8
16.9
Minor 5ss
37.5
-1.4
2.8
48.3
41.8
Minor BPS
46
-0.2
3.6
83.03
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017621
Chromosome:
PEDO01009728.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025962
98471 - 109238
10768
ENSAPLT00000048407
98471 - 109238
10768
ENSAPLT00000035630
98471 - 109238
10768