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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009728.1_105579_105894_F

Intron Information:

Intron Rank:
125489
Intron Class:
major
Intron Phase:
Intron Coordinates:
105579 - 105894
Intron Length:
316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTGAT
5'SS Class:
major
3'SS Sequence:
TTTCTGCTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTCTGCTTTAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
75.5
34.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
75.8
0.58
1
79.5
32.9
Minor 5ss
36.5
-1.5
3.4
54.7
43.6
Minor BPS
48.1
-0.3
2.3
60.46
46.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017621
Chromosome:
PEDO01009728.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025962
98471 - 109238
10768
ENSAPLT00000048407
98471 - 109238
10768
ENSAPLT00000035630
98471 - 109238
10768