Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009728.1_106208_106514_F

Intron Information:

Intron Rank:

125491

Intron Class:

major

Intron Phase:

Intron Coordinates:

106208 - 106514

Intron Length:

307

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAGGTCTC

5'SS Class:

strong_major

3'SS Sequence:

TCCCCCTTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACTAAC

U12 Branch Point Sequence:

TTACCCTGAAAC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.9

0.85

76.2

39.9

Major BPS

0.45

0.9

67.6

25.3

Major PPT

78.4

0.64

0.7

76.4

25.6

Minor 5ss

37.4

-1.4

3.3

52.4

44.8

Minor BPS

62.3

0.36

1.6

71.85

38.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017621

Chromosome:

PEDO01009728.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048407

98471 - 109238

10768

ENSAPLT00000035630

98471 - 109238

10768

ENSAPLT00000025962

98471 - 109238

10768