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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009728.1_107148_107439_F

Intron Information:

Intron Rank:
125494
Intron Class:
major
Intron Phase:
Intron Coordinates:
107148 - 107439
Intron Length:
292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
CTATTATTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTATGTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
76.6
33.6
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
83.8
0.76
0.8
81.3
35
Minor 5ss
31.7
-2.1
3.1
36.4
42
Minor BPS
54.6
0.22
2
76.15
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017621
Chromosome:
PEDO01009728.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035630
98471 - 109238
10768
ENSAPLT00000025962
98471 - 109238
10768
ENSAPLT00000048407
98471 - 109238
10768