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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009728.1_11393_11772_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11393 - 11772
Intron Length:
380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CCCCTCTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGGTTTCTAACC
Flanking Amino Acid:
EKCAIIKTSLGKVTLYYQQG
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
67.1
44.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
77.2
0.61
0.8
68.4
31.9
Minor 5ss
30.7
-2.2
3.4
40.1
46
Minor BPS
57.5
0.21
1.7
67.12
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016098
Chromosome:
PEDO01009728.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016789
10521 - 11981
1461