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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009728.1_118575_121814_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
118575 - 121814
Intron Length:
3240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTGCC
5'SS Class:
major
3'SS Sequence:
TTTATTTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTCTCTCCAATT
Flanking Amino Acid:
WLDGSVLDTKHAITTRENCK
Intron Amino Acid Position:
451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1
63.4
35.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87.9
0.85
0.7
83.6
31.3
Minor 5ss
30.7
-2.2
3.1
41.6
38.8
Minor BPS
54.7
0.23
1.9
76.58
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015850
Chromosome:
PEDO01009728.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016518
118461 - 131998
13538