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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009728.1_118988_119070_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
118988 - 119070
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
CCATGTCCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TGTCTTTCCATG
Flanking Amino Acid:
SGERRCQGYLTQTEAERQKI
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
77.2
37.6
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
72.5
0.51
0.9
64.8
36.3
Minor 5ss
35.3
-1.7
3.1
46.5
42.9
Minor BPS
43
-0.7
1.9
48.95
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017352
Chromosome:
PEDO01009728.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020260
115242 - 121977
6736