Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009728.1_119465_119834_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

119465 - 119834

Intron Length:

370

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGTGCT

5'SS Class:

strong_major

3'SS Sequence:

GGTTTGCATCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTGCAT

U12 Branch Point Sequence:

CACCCCAGGACT

Flanking Amino Acid:

LLQSARSTVGRWETSSTRRM

Intron Amino Acid Position:

245

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.8

0.87

0.9

35.1

Major BPS

0.62

1.4

85.7

34.9

Major PPT

68.9

0.43

1.1

58.9

46.4

Minor 5ss

34.3

-1.8

3.4

50.5

Minor BPS

45.8

-0.2

1.8

59.58

43.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017352

Chromosome:

PEDO01009728.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020260

115242 - 121977

6736