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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009728.1_124588_124683_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
124588 - 124683
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTTCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAC
U12 Branch Point Sequence:
TTCTTTTCCAAG
Flanking Amino Acid:
FREGFIRQPARREDLGLCLL
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
54.8
0.12
1.3
66.4
39.9
Major PPT
74.9
0.56
1
74.5
34.1
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
43.4
-0.6
2
51.7
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015850
Chromosome:
PEDO01009728.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016518
118461 - 131998
13538