Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009728.1_124659_125772_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

124659 - 125772

Intron Length:

1114

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GAT|GCAGGGGGA

5'SS Class:

major

3'SS Sequence:

ACAGGACGCGGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ATGTTAT

U12 Branch Point Sequence:

TCCATCTCACCC

Flanking Amino Acid:

GEEHRGSRIQMEDEGPHVEQ

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.2

0.5

1.3

64.8

36.1

Major BPS

72.5

0.56

1.2

63.4

Major PPT

40.8

-0.5

1.6

31.9

35.6

Minor 5ss

19.3

-3.5

4.3

31.7

43.3

Minor BPS

46.3

-0.3

1.8

54.33

43.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029168

Chromosome:

PEDO01009728.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016502

124558 - 127003

2446