Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009728.1_131394_132549_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

131394 - 132549

Intron Length:

1156

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GGG|GCAGATAAG

5'SS Class:

major

3'SS Sequence:

GGCTGCAAACCAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGTTAAT

U12 Branch Point Sequence:

GTTGTGTTAATA

Flanking Amino Acid:

LCKHPEFWIGWSWWCGSCQP

Intron Amino Acid Position:

499

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.3

0.39

1.3

59.1

45.3

Major BPS

84.4

0.85

34.5

Major PPT

50.9

0.02

1.1

41.3

42.1

Minor 5ss

22.3

-3.2

3.7

23.4

37.6

Minor BPS

51.9

0.06

2.1

40.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018838

Chromosome:

PEDO01009728.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036776

131361 - 139507

8147