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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009728.1_138787_139134_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
138787 - 139134
Intron Length:
348

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CTG|GCCTTTATG
5'SS Class:
weak_major
3'SS Sequence:
AGAGAAAGTTCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
CATCCCTCAATT
Flanking Amino Acid:
SQELLELWLLISFTSQIILK
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55
0.12
1.3
58.3
46
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
49.3
-0
1.1
41.4
46.4
Minor 5ss
30.7
-2.2
3.7
39.3
41.1
Minor BPS
62.9
0.48
1.6
75.19
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018838
Chromosome:
PEDO01009728.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047121
132595 - 143208
10614