Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009728.1_139276_139315_R

Intron Information:

Intron Rank:

Intron Class:

minor-like

Intron Phase:

Intron Coordinates:

139276 - 139315

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCC|GTGACCTTC

5'SS Class:

weak_minor

3'SS Sequence:

TTTCACCAAGGAG|C

3'SS Class:

degenerate_minor

U2 Branch Point Sequence:

ATTTCAC

U12 Branch Point Sequence:

TGTTATTTCACC

Flanking Amino Acid:

KWDLLLLQEPRWVLLDPVQR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

48.8

-0

1.4

51.4

42.7

Major BPS

81.3

0.78

0.8

83.4

26.1

Major PPT

48.6

-0

1.7

56.5

38.7

Minor 5ss

51.4

0.05

2.7

71.9

38.6

Minor BPS

57.1

0.2

1.9

71.93

39.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018838

Chromosome:

PEDO01009728.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016506

132595 - 139372

6778