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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009728.1_15538_18014_F

Intron Information:

Intron Rank:
148749
Intron Class:
major
Intron Phase:
Intron Coordinates:
15538 - 18014
Intron Length:
2477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCATCC
5'SS Class:
major
3'SS Sequence:
TTGCAATCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGCAAT
U12 Branch Point Sequence:
CTGCTTGCAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.4
0.41
1.2
60.4
39.9
Major BPS
61.8
0.29
1.4
70.7
42.6
Major PPT
69
0.43
0.9
61.8
38.7
Minor 5ss
43.4
-0.7
3.2
60.2
44.5
Minor BPS
40.5
-0.7
2
46.52
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030072
Chromosome:
PEDO01009728.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045403
14982 - 18539
3558