About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009728.1_23907_24288_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
23907 - 24288
Intron Length:
382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTGGC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAA
U12 Branch Point Sequence:
TTTCTCTCACAA
Flanking Amino Acid:
SQLYREALHKAFREFQTMDC
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
1
71.4
40
Major BPS
70.2
0.5
1
72.1
33
Major PPT
85
0.79
0.7
82.1
29
Minor 5ss
32
-2.1
3.3
44
43.8
Minor BPS
48.5
-0.1
1.9
66.16
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016019
Chromosome:
PEDO01009728.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016724
21540 - 26243
4704