Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01009728.1_34181_35015_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

34181 - 35015

Intron Length:

835

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGCGTGGA

5'SS Class:

strong_major

3'SS Sequence:

CTCTTCTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTCTAC

U12 Branch Point Sequence:

TTGCCGCTTACT

Flanking Amino Acid:

VLEKVVKKFKENLRDELGRG

Intron Amino Acid Position:

354

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.8

0.73

68.6

38.3

Major BPS

51.3

0.03

1.3

52.4

42.7

Major PPT

89.4

0.89

0.6

87.7

22.4

Minor 5ss

25.5

-2.8

3.1

31.8

42.5

Minor BPS

44.4

-0.3

2.5

70.59

45.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000000931

Chromosome:

PEDO01009728.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046685

31249 - 42684

11436

ENSAPLT00000000911

31249 - 42684

11436